Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs10222669 | chr3:74603940 | T/C | 1.89E-5 | 488 | 15.33 | 17 | 18.85 | KM Plot |
| THCA | rs10232815 | chr7:76418674 | A/G | 1.81E-6 | 480 | 15.33 | 17.05 | 15.67 | KM Plot |
| THCA | rs10233683 | chr7:30176305 | C/G | 1.11E-6 | 490 | 15.23 | 16.63 | 12.07 | KM Plot |
| THCA | rs10235003 | chr7:30117683 | T/C | 9.49E-5 | 486 | 15.13 | 16.63 | 15.32 | KM Plot |
| THCA | rs10235912 | chr7:76418550 | T/C | 1.77E-6 | 481 | 15.33 | 17.07 | 15.67 | KM Plot |
| THCA | rs10249569 | chr7:16471712 | G/T | 2.34E-8 | 473 | 15.67 | 16.57 | 17.77 | KM Plot |
| THCA | rs10250936 | chr7:64113710 | A/G | 5.49E-7 | 489 | 15.97 | 15.17 | 16.87 | KM Plot |
| THCA | rs10260418 | chr7:30068028 | G/A | 5.68E-5 | 486 | 15.17 | 16.33 | 17.73 | KM Plot |
| THCA | rs10260502 | chr7:16470531 | T/C | 1.56E-9 | 477 | 15.48 | 16.62 | 17.77 | KM Plot |
| THCA | rs10263430 | chr7:30015446 | A/G | 7.56E-5 | 485 | 15 | 17 | 15.32 | KM Plot |
| THCA | rs1026697 | chr15:54219071 | C/T | 1.11E-16 | 490 | 15.23 | 17.83 | 11 | KM Plot |
| THCA | rs1027457 | chr16:20781194 | C/A | 4.8E-5 | 490 | 16.37 | 14.67 | 17.47 | KM Plot |
| THCA | rs10276203 | chr7:76418306 | C/T | 1.77E-6 | 481 | 15.33 | 17.07 | 15.67 | KM Plot |
| THCA | rs10282432 | chr7:16472337 | A/T | 4.75E-10 | 475 | 15 | 17.7 | 17.77 | KM Plot |
| THCA | rs1034477 | chr1:184114039 | G/A | 0 | 478 | 15.27 | 17.73 | 17.77 | KM Plot |